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Old 10-04-2011, 09:18 AM   #1
shuang
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Default suitable tools for hetero SNP/INDEL discovery?

What would be the best software for discovering SNP/INDEL in both hetero and homo-zygote case? My data is from Sanger sequencing.

I tried bwa-sw with Samtools. It does not seem be able to distinguish hetero from bad-signal bases.
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