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Old 10-22-2011, 07:09 PM   #1
camelbbs
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Default Does the transcripts.gtf in cuffdiff is the output of cufflinks?

I see the parameter of cuffdiff is
cuffdiff transcripts.gtf 1.bam 2.bam

Does this transcritpts.gtf is the output of cufflinks or just the reference transcript annotation?

Thanks
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