updating rs ID'd to new build

psb90 · 03-21-2012, 10:42 PM

Are there any tools available to convert dbSNP rs ID from one build to another (which also takes into consideration merged and removed rsIDs)?

Heisman · 03-22-2012, 12:07 AM

annovar has databases available for dbsnp 135, 132, 131, 130, and 129 (you can only get some of them with either hg18 or hg19 exclusively). You can run a list of variant positions through all of them and see what comes up.

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03-21-2012, 10:42 PM	#1
psb90 Junior Member Location: india Join Date: Mar 2012 Posts: 1	updating rs ID'd to new build Are there any tools available to convert dbSNP rs ID from one build to another (which also takes into consideration merged and removed rsIDs)?

03-22-2012, 12:07 AM	#2
Heisman Senior Member Location: St. Louis Join Date: Dec 2010 Posts: 535	annovar has databases available for dbsnp 135, 132, 131, 130, and 129 (you can only get some of them with either hg18 or hg19 exclusively). You can run a list of variant positions through all of them and see what comes up.