|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| tophat-fusion-post result empty | emilyjia2000 | Bioinformatics | 40 | 10-11-2016 07:06 AM |
| Tophat2 with fusion search and tophat-fusion-post problems | seqfast | Bioinformatics | 9 | 07-30-2013 07:16 PM |
| RNA-Seq: TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. | Newsbot! | Literature Watch | 5 | 07-13-2013 01:02 AM |
| tophat-fusion-post:known fusions? | mrfox | Bioinformatics | 0 | 01-19-2012 09:04 AM |
| tophat fusion --fusion-min-dist | MerFer | Bioinformatics | 1 | 07-24-2011 08:09 PM |
 |
|
|
Thread Tools |
06-21-2012, 01:36 AM
|
#1 |
|
Member
Location: Germany Join Date: Sep 2009
Posts: 21
|
Tophat2 fusion post
Dear Tophat2 user,
After I ran tophat2 with --bowti1 option I am now trying to run tophat-fusion-post. My directory structure is - top_dir -tophat_sample_1When I run post I get an error like EXIT CODE 5 FATAL: Argument 1 ("-db") is not recognized or is improperly formed. Do you have an idea what I am doing wrong? thanks |
|
|
|
06-26-2012, 09:46 AM
|
#2 |
|
Member
Location: New York, NY Join Date: Sep 2011
Posts: 26
|
Why don't you give the command that you tried to run. It sounds like you tried to use a -db option, which isn't supported by tophat-fusion-post.
|
|
|
|
|
06-29-2012, 03:37 AM
|
#3 |
|
Member
Location: Germany Join Date: Sep 2009
Posts: 21
|
the tophat fusion post from Tophat2 uses the newest version of blastn, which has a -db option instead of -d option. That's why I got the errors.
Thank you |
|
|
|
|
| Tags |
| fusion, post, tophat2 |
| Thread Tools | |
|
|
