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12-17-2012, 09:38 AM
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#1 |
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Member
Location: Montreal Join Date: Dec 2012
Posts: 10
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Convert maf (multiple alignment file) to FASTA
Hi everyone,
I have aligned 9 genomes into a maf file. Now, I am trying to convert it into a FASTA file. Does anyone know how? Thank you! |
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12-17-2012, 10:09 AM
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#2 |
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Member
Location: Flagstaff, AZ Join Date: Feb 2010
Posts: 51
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The galaxy tool is built on these libraries (https://bitbucket.org/james_taylor/bx-python/wiki/Home). They also include scripts to join blocks together before converting to fasta
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12-17-2012, 10:18 AM
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#3 |
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Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 7,080
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If you are familiar with galaxy (http://usegalaxy.org) then use the "Convert formats" --> "MAF to Fasta" implementation (actual libraries behind the GUI in "themerlin" post above).
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12-17-2012, 11:54 AM
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#4 |
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Senior Member
Location: Halifax, Nova Scotia Join Date: Mar 2009
Posts: 381
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Mira assembler has a small package to convert MAF to many formats
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12-17-2012, 12:12 PM
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#5 | |
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Member
Location: Flagstaff, AZ Join Date: Feb 2010
Posts: 51
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Quote:
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