|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| BWA sam and Samtools sam->bam conversion problem | maasha | Bioinformatics | 6 | 06-05-2013 08:39 AM |
| How to create a SAM/BAM file from scratch | DNAjunk | Bioinformatics | 9 | 03-23-2012 08:23 AM |
| .SAM to .BAM with SAM file header @PG | emilyjia2000 | Bioinformatics | 13 | 06-14-2011 01:21 PM |
| NEw to Chip-seq and have .bam/.sam/.bam.bai files... then what? | NGS newbie | Bioinformatics | 11 | 05-25-2011 08:48 AM |
| Mosaiktext and paired-end data | ForeignMan | Bioinformatics | 0 | 10-12-2010 05:05 AM |
 |
|
|
Thread Tools |
04-22-2010, 04:08 PM
|
#1 |
|
Member
Location: wisconsin Join Date: Jan 2010
Posts: 12
|
Mosaik: possible for MosaikText to create SAM or BAM, but not compress it?
MosaikText can convert a mosaik output into either SAM or BAM files; however, it always produces a zipped output. Is there a way to make it produce one of these formats without gzipping it?
|
|
|
|
04-22-2010, 09:21 PM
|
#2 |
|
Member
Location: wisconsin Join Date: Jan 2010
Posts: 12
|
correction: the BAM file produced my mosaik can be used as is.
|
|
|
|
|
05-20-2010, 03:59 PM
|
#3 |
|
Junior Member
Location: Bay Area Join Date: Mar 2010
Posts: 3
|
Gambit crashes with .bam file from Mosaik
The visualization software Gambit crashes when I attempt to open my .bam file created using Mosaik (MosaikText). Does anyone else have this problem? I am able to open the .ace file using consed, but I'd like to try Gambit.
|
|
|
|
|
05-27-2010, 07:59 AM
|
#4 |
|
Junior Member
Location: Michigan Join Date: Oct 2009
Posts: 3
|
I recently used MOSAIK to align my short Illumina reads and had the -m unique parameter initialized, but when I convert the map file to .sam format, I see reads that aligned to multiple places. Does anyone understand this?
|
|
|
|
|
| Thread Tools | |
|
|
