SEQanswers

Go Back   SEQanswers > Sequencing Technologies/Companies > Illumina/Solexa

Similar Threads
Thread Thread Starter Forum Replies Last Post
Calculating Tajima's D from SNP frequency data phillim67 Bioinformatics 0 01-01-2015 11:30 AM
Calculating Genotype Likelihood from NGS sorento7 Bioinformatics 3 01-16-2014 06:02 AM
Calculating sample size for RNA-Seq data Genohub Bioinformatics 0 12-24-2013 01:35 PM
Calculating Sample Size Estimates for RNA Sequencing Data RockChalkJayhawk RNA Sequencing 3 12-06-2013 10:57 AM
calculating Your Transcriptome coverage.. in RNA seq data mehtaaditya RNA Sequencing 2 03-13-2013 09:41 AM

Reply
 
Thread Tools
Old 07-17-2015, 09:37 AM   #1
vitor
Junior Member
 
Location: Brazil

Join Date: Apr 2015
Posts: 5
Post Calculating dN/dS with NGS data

Hello,

I have DNA reads mapped in the genome reference in the format .SAM, i need to calculate dN/dS in each ORF.
How can I calculate this?
Someone suggests a script or software?
vitor is offline   Reply With Quote
Old 08-03-2015, 09:39 AM   #2
ymc
Senior Member
 
Location: Hong Kong

Join Date: Mar 2010
Posts: 498
Default

You need ORFs of the same gene from many different species to calculate dN/dS
ymc is offline   Reply With Quote
Reply

Tags
non-synonymous, snp, substitution, synonymous

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 11:10 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO