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09-10-2010, 01:08 AM
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#1 |
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Member
Location: honston Join Date: Nov 2009
Posts: 27
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Using reference sequence in Velvet
hello all,
We have sequenced one kind of strain of a microorganism and get the pair-end short reads data. Then we want to use Velvet to assembly the genome sequence and use the genome sequence of other kind of stain of this microorganism as the reference sequence. Can someone tell me how to do that. Any suggestion will be very appreciate！ |
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09-10-2010, 02:07 AM
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#2 |
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Member
Location: Cambridge Join Date: Feb 2009
Posts: 22
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You may wish to try the recently-released "Columbus" module for velvet. You can find the manual for it on the velvet webpage here:
http://www.ebi.ac.uk/~zerbino/velvet/ |
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12-02-2013, 03:29 AM
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#3 | |
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Senior Member
Location: Australia Join Date: Jul 2013
Posts: 119
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