Hi all
So I wanted to use the following command to get the coverage of each exon of my exon sequencing data:
coverageBed -a <a.bed> -b <b.bed>
where a.bed is the one I got from my exon seq data and b.bed is from refseq from ucsc (both are focusing on one chromosome).
It gave a result as shown in the manual but the top part of the result list (~50 rows) are randomly picked out from the ordered positions from the refseq. Some of them are also duplicated in several lines. The rest part of the list looked all good.
Any idea why?
Thanks!
So I wanted to use the following command to get the coverage of each exon of my exon sequencing data:
coverageBed -a <a.bed> -b <b.bed>
where a.bed is the one I got from my exon seq data and b.bed is from refseq from ucsc (both are focusing on one chromosome).
It gave a result as shown in the manual but the top part of the result list (~50 rows) are randomly picked out from the ordered positions from the refseq. Some of them are also duplicated in several lines. The rest part of the list looked all good.
Any idea why?
Thanks!
Comment