Hello!
I am processing some data that I can't really redo. I only have the IgG isotype control for these samples. They are also pretty low sequencing depth. My question is, has anyone here tried to use IgG isotype controls with SPP using the phantompeakqualtools scripts?
The nice thing about these data sets is that there are replicates and different cells types and so it may be nice for IDR.
What about using a single input control for the diversity of samples?
TIA
Matt
I am processing some data that I can't really redo. I only have the IgG isotype control for these samples. They are also pretty low sequencing depth. My question is, has anyone here tried to use IgG isotype controls with SPP using the phantompeakqualtools scripts?
The nice thing about these data sets is that there are replicates and different cells types and so it may be nice for IDR.
What about using a single input control for the diversity of samples?
TIA
Matt