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  • #1

    Differential expression analysis for pathway in bacteria

    I have a set of gene list (Kegg ids) and log fold expression values.
    I want to identify a pathway that is differentially expressed from samples in case of bacterial genome.
    Could any one suggest tools for this..
    Thanks.
    Krishna
    Tags: bacteria, pathway, rnaseq
  • #2
    Any one tried DEAP ! http://sourceforge.net/projects/deapathways/
    If you have used any other tools in work please suggest those..
    Thanks
    Last edited by Krish_143; 01-27-2014, 03:00 AM.
    Krishna

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