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Old 12-12-2011, 02:29 PM   #1
gringer
David Eccles (gringer)
 
Location: Wellington, New Zealand

Join Date: May 2011
Posts: 836
Default Computer Language Benchmarks Game

Looking for a fast reverse-complement algorithm, I came across the Debian Computer Language Benchmarks Game:

http://shootout.alioth.debian.org/

Quote:
Here you'll find provisional facts about the performance of programs written in ≈24 different programming languages for a dozen simple tasks. Here you'll find some easy figures which compare the fastest programs contributed for each programming language.
The programs include benchmarks and source code (Revised BSD license). Of interest to bioinformatics folks might be the following programs:

http://shootout.alioth.debian.org/u6...php?test=fasta
http://shootout.alioth.debian.org/u6...p?test=revcomp
http://shootout.alioth.debian.org/u6...st=knucleotide
http://shootout.alioth.debian.org/u6...?test=regexdna
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