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Old 12-13-2011, 12:41 PM   #1
HMorrison
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Location: Massachusetts

Join Date: May 2009
Posts: 116
Default 2NA 4NA search strings

Trying to use SRA; don't want to download entire sra files (fastq), just sampling. Some filter strings work; others don't. Can't get an answer as to how to encode strings other than they are 2 or 4 bit encoded...anyone know how to specify, for example, "CACG[anything]N" where N is really the basecall?
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