SEQanswers

Go Back   SEQanswers > General



Similar Threads
Thread Thread Starter Forum Replies Last Post
de Bruijn graphs ranjani Introductions 5 03-26-2013 06:53 PM
PubMed: Evaluating de bruijn graph assemblers on 454 transcriptomic data. Newsbot! Literature Watch 0 12-14-2012 03:50 AM
Bioconductor R Tutorials / Help for Beginners ETHANol Bioinformatics 11 10-29-2012 07:07 PM
Question on the de Bruijn Graphs aloliveira Bioinformatics 1 04-05-2012 12:24 PM
Dave - interested in trial data sets and high-throughput sequencing tutorials Dave S. Introductions 4 02-02-2010 10:04 AM

Reply
 
Thread Tools
Old 03-26-2013, 03:18 PM   #1
samanta
Senior Member
 
Location: Seattle

Join Date: Feb 2010
Posts: 109
Default Tutorials on de Bruijn graph

Hello all,

I wrote a set of tutorials explaining basic concepts related to de Bruijn graph based assemblers. They were compilation of our blog posts, which are so scattered that I thought it would be nice for readers to find them at one place.

http://www.homolog.us/Tutorials/

Please feel free to offer your positive/negative criticisms
__________________
http://homolog.us
samanta is offline   Reply With Quote
Old 03-27-2013, 07:05 AM   #2
syfo
Just a member
 
Location: Southern EU

Join Date: Nov 2012
Posts: 103
Default

Thanks for this interesting resource.
As a complement I strongly recommend this excellent review:
How to apply de Bruijn graphs to genome assembly
syfo is offline   Reply With Quote
Old 03-27-2013, 07:34 AM   #3
samanta
Senior Member
 
Location: Seattle

Join Date: Feb 2010
Posts: 109
Default

Thanks syfo. Pezvner is the man !!

I compiled a list of primary references last year (http://www.homolog.us/blogs/2012/08/...st-please-add/). Maybe I should compile a list of other useful reviews and tutorials on de Bruijn graph and add at the end of our tutorials.
__________________
http://homolog.us
samanta is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:42 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO