SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
problems in installing AMOS shuang Bioinformatics 17 09-15-2015 02:12 PM
sam created by amos bank2contig has negative start positions ychen De novo discovery 0 05-25-2012 11:31 AM
amos file format kespen General 1 08-12-2011 08:18 AM
Need help for installation of AMOS-2.0.8 ketan_bnf Bioinformatics 1 11-30-2010 07:23 AM
AMOS extractContig woes dmamartin Bioinformatics 0 04-21-2009 07:15 AM

Reply
 
Thread Tools
Old 09-30-2013, 02:31 PM   #1
ewilbanks
Member
 
Location: Davis, CA

Join Date: Mar 2009
Posts: 82
Default amos Bank2contig

Hi folks,

Wondering if anyone knows how to get a amos utilities to spit out a key showing the relationship between amos bank's IID for a read and that read's original name. I'm trying to get a list of reads in assembled contigs as described here:

bank2contig -S asm2.bnk/ >asm.tsv

This spits out what I need, but I have then need some way to relate the read IID to the read's original name. Ideas?

Thanks!
Lizzy
ewilbanks is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 06:38 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO