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Old 01-29-2014, 07:53 PM   #1
Location: Russia, Novosibirsk

Join Date: Oct 2013
Posts: 13
Question samtools mpileup -L argument

Argument -L in samtools mpileup "skips INDEL calling if the average per-sample depth is above INT [250]". Why do we need this option? Why INDELs that have very high coverage should be dropped?

Sacrolfur is offline   Reply With Quote

coverage, indel calling, samtools mpileup

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