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Old 12-14-2015, 01:33 AM   #1
BurgundiaPR
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Default OMIM annotation

Hi everybody,

I am interested by two fields from the OMIM data : Phenotype and Inheritance , but I do not know how to extract them automatically in my pipeline. For the first field, I can use this site http://www.uniprot.org/docs/humsavar, but for the second ? ...

Thanks for your help,
BPR
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Old 12-14-2015, 06:54 AM   #2
tristan dubos
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Hi
what is the type of file you got in result after OMIM ? Sorry i dont remember is it a tabular one ?
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Old 01-04-2016, 04:48 AM   #3
BurgundiaPR
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Hi,

I precisely have no file with OMIM data. What I have planned is to extract information using a perl script and HTML::TableExtract, but i have some difficulty with this module.

May I ask anyone's help ?
For example, I would like to extract the Phenotype and Inheritance fields from :
http://omim.org/entry/612452

Thanks by advance,
BPR
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