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Old 07-18-2016, 08:02 PM   #1
Eteleeb
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Location: Kentucky, USA

Join Date: Nov 2010
Posts: 4
Default Distribution of multi-mapped reads

Hi,

I want to compute the distribution of multi-mapped reads in BWA BAM file. Namely, I want to know the number of times each multi-mapped read appear in the bam file. This can be then used to construct a table like this:

<=10 times #reads
>10 & <20 #reads
and so on ..

I am not sure how to do that. Can anyone try to help?. Thank you.

-Eteleeb
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