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Old 05-03-2019, 11:28 AM   #1
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Location: Canada

Join Date: Jul 2018
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Default How to find internal stem-loop structure in a fasta file?


I have large data sets. In one file having more than 3000 fasta sequences.
I want to check all the sequences. If any of the sequences forming internal stem-loop structure I want to exclude those sequences.

I am only familiar with R but unable to figure it out.

Any help is much appreciated.

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