Hi all,
I got an output from cd-hit-est as follows.
>Cluster 1
0 1997nt, >Locus_3753_Transcript_3/6_Confidence_0.182_Length_1997_UP10_UP11... at 208:1784:3900:5486/+/92.67%
1 15188nt, >Locus_416_Transcript_101/105_Confidence_0.255_Length_15188_UP1... at 11777:1:4159:15952/-/85.81%
2 15605nt, >Locus_2273_Transcript_25/30_Confidence_0.598_Length_15605_UP7... at 3700:15605:4159:16064/+/100.00%
3 16064nt, >Locus_2273_Transcript_26/30_Confidence_0.576_Length_16064_UP7... *
4 15812nt, >Locus_2273_Transcript_30/30_Confidence_0.598_Length_15812_UP7... at 1844:15812:2097:16064/+/99.90%
5 1973nt, >Locus_1056_Transcript_4/7_Confidence_0.185_Length_1973_UP4... at 340:1760:4052:5486/+/93.33%
6 15398nt, >Locus_2370_Transcript_21/28_Confidence_0.628_Length_15398_UP2... at 2321:14533:2883:15100/+/99.27%
In the above what does the tailing information tell us.. For eg: at 2321:14533:2883:15100/+/99.27%.
What individual number means,
Thanks,
I got an output from cd-hit-est as follows.
>Cluster 1
0 1997nt, >Locus_3753_Transcript_3/6_Confidence_0.182_Length_1997_UP10_UP11... at 208:1784:3900:5486/+/92.67%
1 15188nt, >Locus_416_Transcript_101/105_Confidence_0.255_Length_15188_UP1... at 11777:1:4159:15952/-/85.81%
2 15605nt, >Locus_2273_Transcript_25/30_Confidence_0.598_Length_15605_UP7... at 3700:15605:4159:16064/+/100.00%
3 16064nt, >Locus_2273_Transcript_26/30_Confidence_0.576_Length_16064_UP7... *
4 15812nt, >Locus_2273_Transcript_30/30_Confidence_0.598_Length_15812_UP7... at 1844:15812:2097:16064/+/99.90%
5 1973nt, >Locus_1056_Transcript_4/7_Confidence_0.185_Length_1973_UP4... at 340:1760:4052:5486/+/93.33%
6 15398nt, >Locus_2370_Transcript_21/28_Confidence_0.628_Length_15398_UP2... at 2321:14533:2883:15100/+/99.27%
In the above what does the tailing information tell us.. For eg: at 2321:14533:2883:15100/+/99.27%.
What individual number means,
Thanks,
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