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Old 05-25-2012, 01:53 AM   #1
Location: bangalore,india

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Default GTF file for reference of human transcriptome

Hi all,

I have the human transcriptome downloaded from unigene. Is there any other resources where you can get the human transcriptome.? I have the fasta file of the transcriptome. how can i make a reference annotation gtf file from the fasta file.?
Please Help.

Best Regards
oxydeepu is offline   Reply With Quote
Old 05-25-2012, 04:09 AM   #2
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Location: Berlin

Join Date: Jul 2011
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It doesn't make sense to make a GTF file for a transcript fasta file, like yours. You use a GTF file to describe the transcript annotations for a genome fasta file.

I'm not working on human, so other can chime in on good annotation sources.
arvid is offline   Reply With Quote

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