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Old 02-20-2009, 06:09 AM   #21
baohua100
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Now we get new solexa data:

@7_1wo1J99L221/1
GGAGTTGGGGTTCAGATGAAGNAGAGAAAGACCGTAGAAGTTCA
+
UUUUUUUUUUUUUUUQUUUUUEQUQUMMUUPUUUPMPMPPJPPP
@7_Xwo1J99L221/1
GTGTGAAGGTAACCGTAATGTNTGTTGACAAACGCCGTAACGAT
+
UUUQUORRURUUUUUUUUUUUEUUUUUQUUUNNEUPPPPPPPGP
@3_avo1J99L221/1
CAGGGATGGGATATAGTTTGCNTCGGTTTTAATAGTTGGGGGAG
+
UOUUSUUUUUUUUUUURUUUUEUUUUUUUUUUOUUPPPPPPPPP
@7_vuo1J99L221/1
GATGATGATGATGATGAGCTTNTCACTCGACGGTCACAGGCTTT
+
UUUUMUUUUUQUUUUUUUUUUEUUUUUUURUUUPUPPPPPPPMP


the most of char is U , how about this quality score mean ?
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Old 02-20-2009, 09:23 AM   #22
bioinfosm
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Z is better and higher score than U..
More infor here - http://maq.sourceforge.net/fastq.shtml
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Old 02-23-2009, 02:17 AM   #23
BAJ
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Default conversion table for solexa and Phred

I found this table useful it contains both scores for solexa and phred...

http://www.genographia.org/portal/to..._download/file

It is in PDF fromat...
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Old 05-21-2009, 12:36 AM   #24
seq_GA
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How to compare eland and maq quality score?
How to read maq quality score?
Thanks.
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Old 10-11-2020, 07:43 AM   #25
ABC@123
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These types of problems can be persisted if we don't try to fix these. Actually, there I was looking for help with the same problems and that would be good for me to get help with this.
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