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Old 10-29-2010, 08:27 AM   #1
Carlo
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Location: Stanford, CA, USA

Join Date: Oct 2010
Posts: 4
Default Obtaining Junctions from a SAM file...

Hi all. I was wondering if anyone knew of an easy way to obtain a list of junctions from a SAM file produced by Tophat. Unfortunately I do not have the Junctions.bed file that I would normally use. Is there any software package that will output this?

Thanks a lot in advance!

Carlo
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