Go Back   SEQanswers > Applications Forums > RNA Sequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
RNA-Seq: SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Newsbot! Literature Watch 0 02-04-2012 02:00 AM
RNA-Seq: Detection, annotation and visualization of alternative splicing from RNA-Seq Newsbot! Literature Watch 0 01-10-2012 04:00 AM
RNA-Seq: Detection of splicing events and multiread locations from RNA-seq data based Newsbot! Literature Watch 0 10-26-2011 02:50 AM
RNA-Seq: Using RNA-Seq for gene identification, polymorphism detection and transcript Newsbot! Literature Watch 0 04-21-2011 02:10 AM
Intron retain detection using Solexa RNA-seq baohua100 Bioinformatics 0 09-23-2009 10:09 AM

Thread Tools
Old 09-23-2009, 09:47 AM   #1
Senior Member
Location: Canada

Join Date: Jun 2008
Posts: 103
Default Intron retain detection using Solexa RNA-seq

We first find all possible junction alignment and then search all junctions. If all the sites between two junction site are covered by reads, then we identify a intron retain.

Is this OK? There are some Pre-mRNA (contain introns) sequenced by RNA-seq.
baohua100 is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:59 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO