SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Velveth flag question winsettz De novo discovery 0 01-25-2013 07:43 AM
Separate bam file m_elena_bioinfo Bioinformatics 7 07-31-2012 05:12 PM
Can we separate virus using small RNA sequencing luckylove Core Facilities 0 06-20-2012 05:43 PM
velveth assembly with single and paired ends Apexy RNA Sequencing 0 08-05-2011 08:41 AM
Problem with velveth asoke Bioinformatics 1 08-04-2009 07:11 PM

Reply
 
Thread Tools
Old 02-05-2013, 08:28 AM   #1
leshin
Junior Member
 
Location: USA

Join Date: Jul 2012
Posts: 4
Default velveth with -separate option

I just notice that velveth now has a -separate option for paired-read files, so I do not need to create an interleaved single input file with a correct order of left and right reads. But, if I use -separate option for paired-read files, do my two input files still have to be the same order for left and right reads (the first read of two input files are paired, and 2,3,4,..etc)? Will velvet figure out the paired relationship by looking at the sequence ID?

LW
leshin is offline   Reply With Quote
Reply

Tags
assembly, velvet

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 11:01 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO