Has anybody used SOAP2 with gapped alignments? If yes, what did you specify in parameters?
We recently got a Linux box and installed SOAP2 on it, the purpose of that being to do gapped alignments on Solexa data. I have tried, but I never got back gapped alignments, only 1 or 2 mismatches.
Thanks.
We recently got a Linux box and installed SOAP2 on it, the purpose of that being to do gapped alignments on Solexa data. I have tried, but I never got back gapped alignments, only 1 or 2 mismatches.
Thanks.