Go Back   SEQanswers > Events / Conferences

Similar Threads
Thread Thread Starter Forum Replies Last Post
Live on-line tutorial using Integrated Genome Browser (November 12, 2014 11:30am-12pm Nowlan Freese Events / Conferences 0 10-30-2014 08:59 AM
Galaxy-ChIP-seq analysis: UCSC Genome browser can't read the wig file. Galaxy user Bioinformatics 0 02-18-2013 07:57 PM
Importing Genome in IGB and Chip Seq data in IGV ayushraman Bioinformatics 1 09-24-2011 05:42 AM
ChIP-Seq: PRI-CAT: a web-tool for the analysis, storage and visualization of plant Ch Newsbot! Literature Watch 0 05-26-2011 02:10 AM
Transcription factors visualization tool for chip seq data shum1 General 0 05-03-2010 07:29 AM

Thread Tools
Old 01-14-2015, 09:46 AM   #1
Nowlan Freese
Junior Member
Location: Kannapolis, NC

Join Date: Sep 2014
Posts: 9
Default ChIP-Seq Analysis and Visualization using Galaxy and IGB. (January 28, 11:30am-12pm E

“Focus on a Feature: ChIP-Seq Analysis and Visualization using Galaxy and IGB.”

This Focus on a Feature has finished. The recording can be found here.

The complete Galaxy history can be found here.

Previous Focus on a Feature recordings can be found here.

1. Aligning ChIP-Seq data in Galaxy.
2. Calling Peaks using MACS in Galaxy.
3. Visualizing ChIP-Seq data in IGB.
4. Comparative visualization with RNA-Seq data in IGB.

Integrated Genome Browser (IGB)
IGB provides an advanced, highly customizable environment for exploring and analyzing large-scale genomic data sets. Using IGB you can visually analyze RNA-Seq, ChIP-Seq, and many other genomic projects. The best part is that IGB can be used to produce publication quality images from genome scale data sets, and is provided FREE.

If you have questions or need assistance, contact us at:

Nowlan Freese
Ann Loraine

To download and start IGB, go to and select the "Download Now" link. Select the medium or small memory option, depending on amount of available RAM. Once IGB starts, choose Help / Tutorials for a quick introduction to IGB.

**Please share this with students and colleagues**

Last edited by Nowlan Freese; 02-08-2015 at 12:14 PM.
Nowlan Freese is offline   Reply With Quote

chip-seq, galaxy, igb, macs, rna-seq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:53 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO