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Old 01-22-2014, 06:00 AM   #1
sindrle
Senior Member
 
Location: Norway

Join Date: Aug 2013
Posts: 266
Default edgeR: readDGE "no lines available in input"

This is amazing, I have used edgeR quite some times now, but now Im running with some other samples, but gets an error:

d <-readDGE(targets,path="path/to/files",skip=5,comment.char="!")
Error in read.table(file = file, header = header, sep = sep, quote = quote, :
no lines available in input

How come? my targets file is correct, so is my path. HTSeq files are also ok.


UPDATE:

Never mind!! Turns out one HTSeq file had no output....

Last edited by sindrle; 01-22-2014 at 06:04 AM. Reason: Found error
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