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Old 01-22-2014, 06:00 AM   #1
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Location: Norway

Join Date: Aug 2013
Posts: 266
Default edgeR: readDGE "no lines available in input"

This is amazing, I have used edgeR quite some times now, but now Im running with some other samples, but gets an error:

d <-readDGE(targets,path="path/to/files",skip=5,comment.char="!")
Error in read.table(file = file, header = header, sep = sep, quote = quote, :
no lines available in input

How come? my targets file is correct, so is my path. HTSeq files are also ok.


Never mind!! Turns out one HTSeq file had no output....

Last edited by sindrle; 01-22-2014 at 06:04 AM. Reason: Found error
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