Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • TCGA sample type

    Hi,
    I am using the TCGA. It is useful.But I had some questions about the Sample type.I got some information, like code tables report tells me that 01 means Primary solid Tumor. However it maybe should be more in detail, such as 06 means Metastatic, I don't know the cancer cell transferred before the surgery or after. And I don't know whether the metastatic sample is from the breast or not when the breast cancer sample type is 06. I also don't understand that 07 means Additional Metastatic, what dose the "additional metastatc" mean? I am very confused.

    I am looking forward to your answers!

    Thanks for your help!

  • #2
    You can download clinical data collected by the BCR using the DAM:

    The Cancer Genome Atlas (TCGA) is a landmark cancer genomics program that sequenced and molecularly characterized over 11,000 cases of primary cancer samples. Learn more about how the program transformed the cancer research community and beyond.


    If you enter any "disease code" you can find all open access BCR data here:

    https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/"disease code"/bcr/

    The disease, tissue, and data codes can be queried here:

    The Cancer Genome Atlas (TCGA) is a landmark cancer genomics program that sequenced and molecularly characterized over 11,000 cases of primary cancer samples. Learn more about how the program transformed the cancer research community and beyond.

    Comment


    • #3
      Originally posted by m_two View Post
      You can download clinical data collected by the BCR using the DAM:

      The Cancer Genome Atlas (TCGA) is a landmark cancer genomics program that sequenced and molecularly characterized over 11,000 cases of primary cancer samples. Learn more about how the program transformed the cancer research community and beyond.


      If you enter any "disease code" you can find all open access BCR data here:

      https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/"disease code"/bcr/

      The disease, tissue, and data codes can be queried here:

      https://tcga-data.nci.nih.gov/datare...blesReport.htm
      Thanks u very much! It is helpful!

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin




        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
        04-22-2024, 07:01 AM
      • seqadmin
        Current Approaches to Protein Sequencing
        by seqadmin


        Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
        04-04-2024, 04:25 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 08:47 AM
      0 responses
      10 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-11-2024, 12:08 PM
      0 responses
      60 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 10:19 PM
      0 responses
      57 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 09:21 AM
      0 responses
      53 views
      0 likes
      Last Post seqadmin  
      Working...
      X