Hi everyone,
I used this command to count the number of short-read cover a position:
If I run this command several time, it would be very slow.
Is there any way to count the number of short-read cover millions of positions.
Thank you in advance!
I used this command to count the number of short-read cover a position:
Code:
samtools view data.bam 20:1000-1000 -c
Is there any way to count the number of short-read cover millions of positions.
Thank you in advance!
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