I am attempting to utilize blastn output from paired end files for MEGAN analysis. However, selecting the paired-read checkbox in the "import from blast" window does not seem to work. I have tried changing file names to correspond to an R1 R2 suffix scheme but nothing seems to work. Has anyone been able to get this to work? Also would there be anyway to do this through the MEGAN command-line?
I am using MEGAN 5.1 but I also have MEGAN 5.0.3 and both behave similarly.
Thanks!
I am using MEGAN 5.1 but I also have MEGAN 5.0.3 and both behave similarly.
Thanks!
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