How do I set up bowtie to run through all my input files in a folder?
Assume my input files are in fasta format and named:
IsomiR_377G.txt,
IsomiR_377R.txt,
IsomiR_379G.txt,
....
any my bowtie command is
bowtie hg19.ebwt -q input -s output.sam
Assume my input files are in fasta format and named:
IsomiR_377G.txt,
IsomiR_377R.txt,
IsomiR_379G.txt,
....
any my bowtie command is
bowtie hg19.ebwt -q input -s output.sam
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