Hi all,
I'm wondering if anyone knows a way to browse the Cloonan et al. (Nature Methods '08) RNAseq data from mouse ES/EB cells, preferably on UCSC Genome Browser?
For example, data from the Mortazavi paper is on the Wold lab website in "wiggle" format which I uploaded to UCSC genome browser with no problem. But the Cloonan paper data is in a strange (to me) format in the NCBI Short Read Archive (e.g. "ES.all.combined.positive.wig.rounded.condensed.4plus").
Does anyone know what to do with this file? The Short Read Archive doesn't seem to have any clear documentation on this....
Thanks a lot!
Matt
I'm wondering if anyone knows a way to browse the Cloonan et al. (Nature Methods '08) RNAseq data from mouse ES/EB cells, preferably on UCSC Genome Browser?
For example, data from the Mortazavi paper is on the Wold lab website in "wiggle" format which I uploaded to UCSC genome browser with no problem. But the Cloonan paper data is in a strange (to me) format in the NCBI Short Read Archive (e.g. "ES.all.combined.positive.wig.rounded.condensed.4plus").
Does anyone know what to do with this file? The Short Read Archive doesn't seem to have any clear documentation on this....
Thanks a lot!
Matt
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