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Old 09-21-2015, 02:09 PM   #1
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Location: Boston area

Join Date: Sep 2015
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Default Genome In A Bottle allele freqiencies

I downloaded the recent vcf file of NA12878 from the link below and would like to compare the allele frequencies of the published variants with frequencies of variants I found in my dataset. The published files does not contain "AF" or allele frequencies. I searched other versions of vcf as well and also in 1000Genomes web site.
Did anyone find this useful information?

This is the link I used:
NoaHenig is offline   Reply With Quote

1000genomes, genome in a bottle, giab

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