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Old 06-28-2012, 10:11 AM   #1
caswater
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Location: Canada

Join Date: Jun 2011
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Default indel caller - GATK or Pindel, or anything else?

Hi, I found GATK has improved its indel calling in its recent release, but not sure how it is compared with pindel. Has anyone made a comparison with that, and which one is recommended for whole-genome-sequencing data analysis?

Thank you!!!
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