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Old 10-17-2012, 12:58 AM   #1
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Default Discussion on pre-processing Illumina data


I am new in Bioinformatics, and I would like to know what kind of pre-processing ( ex.: trimming, filtering) you do with Illumina data, depending of your data and objectives, example if is RNAseq, or SNPs , or deepening on the tools you will use.

I would like to know from experts what are the steps and criteria they use to pre-process the data and some advices also. I am trying to make some kind of guideline with that information.

Thank you.
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Old 10-17-2012, 03:51 AM   #2
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There are independent threads on most of the individual steps on SeqAnswers but you can start here at the various how-to's:
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