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Old 11-07-2012, 12:40 PM   #1
rama
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Default exon and intron numbers of genes

Hi All,

Please excuse me if this is going to be a repeat of any earlier post, I have been searching through various posts thinking someone must have asked this before but couldn't find.
I have a bed file with genomic coordinates and I want to match with gene structure to find the exon and intron numbers of a gene that match/overlap the coordinates. Thanks for reading the post, I really appreciate for taking your time.

Rama
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Old 11-07-2012, 01:06 PM   #2
DRAT
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Hello Rama,

PeakAnalyzer will do it for you. If you work with human or mouse genome the annotation is also provided within the program.

http://www.bioinformatics.org/peakan.../Main/Overview
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Old 11-07-2012, 01:12 PM   #3
rama
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Thank you, I never used it but sure will give a try.
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