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Old 05-03-2017, 07:02 AM   #1
ap2em
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Location: Charlottesville, VA

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Default PeakSeq mm10 mappability

I am currently trying to create a mm10 mappability using peakseq from the code on http://info.gersteinlab.org/PeakSeq. I have gotten all the way up to creating the .hash files using the python compile, but am having issues with the next step, which is described as "use the CountMap as normal'. I'm not sure whether or not I'm supposed to run the CountMap or Map python command first and how to move on from here. Any help would be appreciated.
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