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Old 02-14-2011, 08:48 AM   #1
aloliveira
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Location: Brazil

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Default Nexgen simulator.

Hello,

Is there any software that simulates the large-scale sequencing generated by Solexa and SOLiD platforms? I have some genomes and wanted to test some assemblers to observe their performance and need a program that shred the genome into small fragments with a certain coverage.

Best regards,
André.
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Old 02-14-2011, 08:57 AM   #2
jts
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Default

I have found the SimSeq simulator to be quite useful:

https://github.com/jstjohn/SimSeq
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