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  • Trinity not working error

    Hello
    I am trying to use Trinity for ne dove assembly. I have registered for galaxy but when i run his tool for data, I get empty files. Could some body please guide me in the right direction?? What are the other places where I can get Trinity as a software downloaded from??
    Dips

  • #2
    Hmm .. I would not have thought of galaxy as a place to run trinity (especially if you have a large dataset). What kind of genome (size) are you working with? Are you using trinity with a local galaxy mirror? If so, you may get the best assistance by working with local folks who support your galaxy mirror.

    You can download trinity from their website: http://trinityrnaseq.github.io/ I am going to hazard a guess that you are probably not familiar with command line/linux (since you are using galaxy). This would not be a trivial program to get installed/running for a new comer. Memory requirements for trinity are also high.

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