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Old 05-20-2017, 12:40 AM   #1
hujiacun
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Location: china,guangzhou

Join Date: Mar 2015
Posts: 17
Default how to get all AGI ID

hi,
I have a fasta file including arabidopsis protein sequences like attached below. The uniprot AC is provided after the ">sp|", like ">sp|A8MQL7|". How can I get all their AGI ID like "AT3G04715" in an excel file. Thanks!

Attached examples:
>sp |A8MQL7| Protein RALF-like 20
MVLSKKTIMSFALFGHHERJYEDFSFHSHSHJJSJRJYU
>sp |A8MQM2| protein RALF-lile 6
AKHJSJHAFGAHFGLAGLNGAIYUEFNVJGIOAOPGAOJSFO
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