Hi,
I have desktop with following configurations:
RAM:128GB
OS:Ubuntu
CPUs:40
On-line CPU(s) list:0-39
Thread(s) per core:2
Core(s) per socket:10
So If want to do alignment using bowtie or tophat, what is the maximum numebr of threads can specified for parameter "p" to facilititate faster mapping of reads.
If I want to run mapping parallely for multiple fastq files, how many number of threads can I specify to make alignment faster.
I have desktop with following configurations:
RAM:128GB
OS:Ubuntu
CPUs:40
On-line CPU(s) list:0-39
Thread(s) per core:2
Core(s) per socket:10
So If want to do alignment using bowtie or tophat, what is the maximum numebr of threads can specified for parameter "p" to facilititate faster mapping of reads.
If I want to run mapping parallely for multiple fastq files, how many number of threads can I specify to make alignment faster.
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