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Acquiring contigs, de Bruijn graphs, velvet bioinf Bioinformatics 8 10-14-2012 08:27 PM
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Old 07-10-2012, 11:18 PM   #1
ranjani
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Default de Bruijn graphs

i am new to this concept pls any one tell me the book that helps in understanding de Bruijn graphs used in de novo assembly.cmranjani44@yahoo.com
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Old 07-11-2012, 07:37 AM   #2
cement_head
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Quote:
Originally Posted by ranjani View Post
i am new to this concept pls any one tell me the book that helps in understanding de Bruijn graphs used in de novo assembly.cmranjani44@yahoo.com
Hi,

There is a very good & clear explanation in the CLC Genomics Workbench Manual ( http://www.clcbio.com/files/usermanu...ser_Manual.pdf ).

See Pages 464 ~ 473.

- CH
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Old 07-11-2012, 08:37 AM   #3
GenoMax
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Nature biotechnology has a good article: http://www.nature.com/nbt/journal/v2.../nbt.2023.html

If you do not have access to an online subscription then here is the reference : Nature Biotechnology, Vol 29, 987–991 (2011)
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Old 07-11-2012, 11:02 PM   #4
ranjani
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thank u...
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Old 07-12-2012, 04:54 AM   #5
HESmith
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Samanta's blog has a nice series of entries explaining de Bruijn graphs (starting here).
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Old 03-26-2013, 07:53 PM   #6
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I compiled those earlier commentaries on de Bruijn graphs with additional materials in the form of easily accessible tutorials -

http://homolog.us/Tutorials
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