I have SOLiD strand specific single reads and am using Cufflinks(0.9.1) and Tophat(1.1.1).
Cufflinks help page says library-types are the following
illumina-stranded-paired-end
illumina-stranded-single-end
illumina-unstranded (default)
solid-paired-end
solid-single-end
Which library-types should I use to utilize strand information ?
thanks
Cufflinks help page says library-types are the following
illumina-stranded-paired-end
illumina-stranded-single-end
illumina-unstranded (default)
solid-paired-end
solid-single-end
Which library-types should I use to utilize strand information ?
thanks
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