I got this error message from SAMTOOLS:
samtools view -q 30 NA12878.chrom1.SLX.maq.SRP000032.2009_07.bam 1:532036-533055
[bam_header_read] EOF marker is absent. The input is probably truncated.
V_0003_FC3009KAAXX:2:22:1481:1181 99 1 531990 72 47M = 532035 92 TTAGGGTGCCTGGGTAATAGCAGAGGAAGAAAAAGGCTTAGAGTTGG +>5@?>+A::BA@=::7<8@78?3@<8:<88:::=:2<1.<.;5-93 RG:Z:SRR001134 MF:i:18 Aq:i:0 NM:i:1 UQ:i:30 H0:i:0 H1:i:6
when using this BAM file from the 1000GP: ftp://ftp.1000genomes.ebi.ac.uk/vol1...32.2009_07.bam
Is a truncated file a sign of something seriously wrong? I am using SAMTOOLS v. 0.1.16 if that helps.
samtools view -q 30 NA12878.chrom1.SLX.maq.SRP000032.2009_07.bam 1:532036-533055
[bam_header_read] EOF marker is absent. The input is probably truncated.
V_0003_FC3009KAAXX:2:22:1481:1181 99 1 531990 72 47M = 532035 92 TTAGGGTGCCTGGGTAATAGCAGAGGAAGAAAAAGGCTTAGAGTTGG +>5@?>+A::BA@=::7<8@78?3@<8:<88:::=:2<1.<.;5-93 RG:Z:SRR001134 MF:i:18 Aq:i:0 NM:i:1 UQ:i:30 H0:i:0 H1:i:6
when using this BAM file from the 1000GP: ftp://ftp.1000genomes.ebi.ac.uk/vol1...32.2009_07.bam
Is a truncated file a sign of something seriously wrong? I am using SAMTOOLS v. 0.1.16 if that helps.
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