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04-22-2011, 02:04 PM
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#1 |
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Junior Member
Location: USA Join Date: Jul 2010
Posts: 8
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not uniquely mapped reads
We got a large fraction (70%) of not uniquely mapped reads. Just wondering if anyone knows the possible cause?
Thanks in advance. |
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04-22-2011, 02:27 PM
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#2 |
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Nils Homer
Location: Boston, MA, USA Join Date: Nov 2008
Posts: 1,285
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What experiment, what technology? Please be verbose in your answer!
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04-22-2011, 03:07 PM
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#3 |
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Junior Member
Location: USA Join Date: Jul 2010
Posts: 8
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Thanks, nilshomer!
RNA-seq using HiSeq. Seems that majority of not uniquely mapped reads come from either one chromosome or mitochondrion genome. |
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