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01-21-2014, 08:28 AM
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Member
Location: Philadelphia Join Date: Feb 2012
Posts: 20
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Bowtie1 for ChIP-seq: uniquely mapped reads with up to two mismatches
Hi All,
I am using Bowtie 1 (0.12.7) to map ChIP-seq reads to mouse genome. I am trying to only report the uniquely mapped reads with two or less mismatches. The options I used is "-v 2 -m 1". Are these options correct? Many thanks! Best, Jerry |
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| bowtie, chip-seq, uniquely mapped |
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