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  • Transcription start sites clustering

    Hello, everybody. I am new here and am working on transcriptional start sites (TSS) identification. Does anybody happen to know a good software to cluster the TSS when they are closely spaced and output the clusters? Thanks a lot.

  • #2
    Yes, BEDTools

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    • #3
      In Galaxy there is a Cluster tool in "Operate on Genomic Intervals".
      Last edited by steven; 11-20-2009, 07:51 AM. Reason: previous post got stuck in moderation

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      • #4
        Originally posted by steven View Post
        In Galaxy there is a Cluster tool in "Operate on Genomic Intervals".
        Thanks, Steven. It looks very helpful.

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