Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
counting reads mapping to exons and HTseq question PFS Bioinformatics 34 12-17-2013 01:25 PM
DE exons to DE transcripts waterV Bioinformatics 3 08-13-2013 09:55 AM
GATK filter question kjaja Bioinformatics 0 05-09-2012 09:13 AM
Overlapping and non-Overlapping pair-end reads with Tophat senpeng Illumina/Solexa 4 10-16-2011 06:43 PM

Thread Tools
Old 11-25-2014, 06:27 PM   #1
Senior Member
Location: USA

Join Date: Apr 2010
Posts: 102
Default Question: How to filter transcripts with overlapping exons?

When i was going through the bed file, i found that some of the entries define overlapping exons. One example is :

This is UCSC bed file format:

HTML Code:
A01    5943412    5943616    Bra1000073    168    +    5943412    5943616    255,0,0    2    90,124    0,80
where you can see that the first exon goes from 0-90 and the second one from 80-124 (last column)

I am wondering is there a way to filter these kind of transcripts?

upendra_35 is offline   Reply With Quote

bed file format, overlapping exons

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 01:15 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO