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Old 11-25-2014, 06:27 PM   #1
upendra_35
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Location: USA

Join Date: Apr 2010
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Default Question: How to filter transcripts with overlapping exons?

When i was going through the bed file, i found that some of the entries define overlapping exons. One example is :

This is UCSC bed file format:

HTML Code:
A01    5943412    5943616    Bra1000073    168    +    5943412    5943616    255,0,0    2    90,124    0,80
where you can see that the first exon goes from 0-90 and the second one from 80-124 (last column)

I am wondering is there a way to filter these kind of transcripts?



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Upendra
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