Hi all,
I am writing a script to figure out which genes [in the whole genome] are the closest to each one in my list of "interesting" genes. I have a list of "interesting genes", as well as their start and end positions, but I need a list that contains ALL the annotated genes in mus musculus, along with their start and end positions.
Can somebody point me in the right direction?
I have only found the MGI [Mouse Genome Informatics] table found here :
ftp://ftp.informatics.jax.org/pub/re...Coordinate.rpt
But I don't know if this is the standard file of all mus musculus genes and their positions -- certainly there must be a "standard" file such as a GTF or something from RefSeq or Ensembl, no?
Thank you so much,
Carmen
I am writing a script to figure out which genes [in the whole genome] are the closest to each one in my list of "interesting" genes. I have a list of "interesting genes", as well as their start and end positions, but I need a list that contains ALL the annotated genes in mus musculus, along with their start and end positions.
Can somebody point me in the right direction?
I have only found the MGI [Mouse Genome Informatics] table found here :
ftp://ftp.informatics.jax.org/pub/re...Coordinate.rpt
But I don't know if this is the standard file of all mus musculus genes and their positions -- certainly there must be a "standard" file such as a GTF or something from RefSeq or Ensembl, no?
Thank you so much,
Carmen
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